Grant failed to make it past triage? Departmental account looking decidedly bare? Fear not dear reader, we have trawled the net to come up with a list of the best free imaging software out there…<\/p>\n
The following links are to downloads of free software for image acquisition, processing and multi-dimensional analysis. Hardware requirements, application notes and user instructions are all available through the individual websites. Please note that some of the downloads will require site registration.<\/p>\n
BioImageXD<\/a>\u00a0 \u00a0\u00a0Open source software for analysing, processing and visualising multi-dimensional microscopy images.<\/p>\n Cell Profiler<\/a>\u00a0 \u00a0\u00a0Versatile 2D processing platform for high throughput screening applications.<\/p>\n Confocal Assistant<\/a>\u00a0 \u00a0\u00a0Software for 3D processing and analysis of confocal images.<\/p>\n Drishti<\/a>\u00a0 \u00a0\u00a0Advanced software for 3D rendering of volumetric datasets.<\/p>\n FluoRender<\/a>\u00a0 \u00a0\u00a0Interactive 3D rendering tool for confocal microscopy designed specifically for neurobiologists.<\/p>\n Icy<\/a>\u00a0\u00a0open community platform for bioimage informatics. Broad selection of plugins and protocols.<\/p>\n ImageJ<\/a>\u00a0 \u00a0\u00a0Multi-format (Java-based) open source software package for data acquisition, analysis and processing. Extensive functionality conferred via a wide selection of downloadable plugins.<\/p>\n LAS-AF Lite<\/a>\u00a0 \u00a0\u00a0\u2018Lite\u2019 version of the Leica application suite which allows basic processing and analysis of\u00a0 image data obtained from advanced Leica widefield and confocal systems.<\/p>\n LCS Lite<\/a>\u00a0 \u00a0\u00a0\u2018Lite\u2019 version of the Leica confocal software that allows basic processing and analysis of Leica SP2 confocal image files.<\/p>\n Micro-Manager<\/a>\u00a0 \u00a0\u00a0Open source software for control of automated microscopes which runs as a plugin to Image J.<\/p>\n Open Microscopy Environment (OMERO)<\/a>\u00a0 \u00a0\u00a0Client server software for visualisation, management and analysis of biological images.<\/p>\n DeconvolutionLab<\/a>\u00a0 \u00a0\u00a0Software for\u00a0 deconvolution of 2D or 3D microscopic images which runs as a plugin to Image J.<\/p>\n V3D<\/a>\u00a0 \u00a0\u00a0Powerful open source software for visualisation and segmentation of large 3D datasets.<\/p>\n View5D<\/a>\u00a0 \u00a0\u00a0Software for analysis and processing of multi-dimensional volumetric datasets which runs as a plugin to Image J.<\/p>\n VisBio<\/a>\u00a0 \u00a0\u00a0Open source software for visualisation and analysis of multidimensional image data. Interfaces with Image J and OMERO.<\/p>\n Voxx<\/a>\u00a0 \u00a0\u00a0Voxel-based rendering software for 3D analysis of confocal and multi-photon datasets.<\/p>\n LSM image browser<\/a>\u00a0 \u00a0\u00a0Imaging software for Zeiss LSM 5 series confocals.<\/p>\n